Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015889573.1_cds_XP_016444282.1_39362
CDS Infomation

[gene=LOC107769570] [db_xref=GeneID:107769570] [protein=pentatricopeptide repeat-containing protein At3g14330-like] [protein_id=XP_016444282.1] [location=complement(109012..110952)] [gbkey=CDS]
Sequence

ATGGCGATTCCCGCCATTTCTCTACCAACTGTCACAACCACCATAACAGCTACTTCAAGC
TTCAACAAGCTTAACAAAACTCCTCCAAAACCCTTCAACACAAATCTCAAATCCCTCACT
AAATCCGGAAAACTAAACGATGCTCTTCTCCTATTAGAATCCCAAAAAAATTCTCAACCC
GAAAATAAAGAATCTTATTTAAATCTCCTCCATGCATGCATTTCACAGAAATCATTAGAA
CATGGTCACAGGCTGTATCTTCACCTTCTTTTAAATCCAAACAGAAGTAAATTTCTCAAT
GACCCTTTAATTTTATCTAAGTTAATTGTCCTTTTCTCTGTTTGTGATCAGCTAGATGAA
GCTCGTCGTGTTTTCGAGCACCACGGGGTTGAAAACAAGGACCAGCCCGAATCAGTTTGG
GTTGCAATGGCAATTGGGTATTCTAAAAAAGGGTTTTTTAGGGAAGCATTATTGATTTAT
TGTGAAATGTTGTTTAAGTCCATTGAACCGGGGAATTTTGCTTTTTCTATGGCTGTGAAA
GCTTGTTCGGGACTTTCAGATTTGAGGATCGGTAGAGGTGTTCATGCACAGATTGTTAAG
GGTAATAAAGAACCTGATCAAGTTGTGTACAATGCTATTTTGGGAATGTATAGTGAGTGT
GGGTGTTTTGAAGATGTGTTGAAGGTGTTTGAGGAAATGCCTGAGAGAAATGTTGTAAGT
TGGAATTCGTTGATCGCGGGGTTTGTTAAGAAAGGACAGGTTTTTGAGGCATTTGAGACT
TTTAGGAGAATGCAAAAAGATGGAGTGGGATATAGTTGGGTAACTTTTACTACAATTTTA
GCTGTCTGTTCTCAGGTTACTTACCTTTATTATGGGAGAGAGCTACACTCTCAAATTGTT
AAATCAACTAAAGTTCCTGATCTTGTTTTATTAAACTCGCTTTTGGATATGTATGCGAAA
TGTGGAGCTATGGAGTATTGCAGAAGAGTATTTGAGAAAATGAAGTACAAGGACATAACA
TCATGGAATACTGTTATCAATGGGTATGCAATCAATGGTTTGATGAATGAAGCAATGAAG
TTGTTTGATGATATGGTCAGTAGTGGAGTTAGGCCGGATGGGGTGACATTTATCACCTTG
TTGTCTGGCTGTAGCCATGCTGGGTTGGCGGACTTAGGCGAGGAATTGTTTGAAAGCATG
AGTGGAGATTTTGGAATTCGTCCGTCCTCAGAGCATTATGCTTGTCTTGTGGATTTATTA
GGTAGAGCTGGGAAAATTAAAGAGGCACTGCAAGTAGTGGAGAAAATGCCCGTCAAGCCT
AGTGGAAGCATTTGGGGCTCACTGCTCAATTCATGCAGACTTCACGGAAATGTCTCTCTT
GCAGAACTTGTGGCAGAGCAGCTATTTGAGATGGAACCTAACAACTGTGGAAATTACGTG
ATACTATCAAACATTTATGCAAATGCAGGAATGTGGGAGGGAGTTAAAAAAGTGAGGGAG
ATGATGGAAAATAAGGGAATCAAAAAGGAAGCCGGATGCAGCTGGATACAGGTTAGAAAT
AGAGTACACACATTTATGGCTGGTGGCGGTTTTGAATTTCGTAATTCAGATGAATACAAG
GAAGTTTGGGATGAATTATCAGAAGCTATTGAGAAAATGGGGTATAAACCTGATACGAGA
GTTGTGCTTCATGATGTAAACGAGGAAACAAAAGCAGAATGGATATGTGGGCACAGTGAA
CGGCTTGCTACAGTATTTGGTCTGATTCATACTGGTTCTGGTATTCCAATTAGGGTGACA
AAAAATCTTCGAATTTGTGCGGATTGTCACTCTTGGATGAAGTTTGTGTCAGAAATGACG
AGAAGAAAGATTATAGTTAGAGATACAAATCGGTTCCACCATTTTGACAAAGGGATATGC
TCTTGCAATGATTACTGGTGA

Peptide Sequence

PEP ID

XP_016444282.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At3g14330-like [Nicotiana tabacum]
Sequence

MAIPAISLPTVTTTITATSSFNKLNKTPPKPFNTNLKSLTKSGKLNDALLLLESQKNSQP
ENKESYLNLLHACISQKSLEHGHRLYLHLLLNPNRSKFLNDPLILSKLIVLFSVCDQLDE
ARRVFEHHGVENKDQPESVWVAMAIGYSKKGFFREALLIYCEMLFKSIEPGNFAFSMAVK
ACSGLSDLRIGRGVHAQIVKGNKEPDQVVYNAILGMYSECGCFEDVLKVFEEMPERNVVS
WNSLIAGFVKKGQVFEAFETFRRMQKDGVGYSWVTFTTILAVCSQVTYLYYGRELHSQIV
KSTKVPDLVLLNSLLDMYAKCGAMEYCRRVFEKMKYKDITSWNTVINGYAINGLMNEAMK
LFDDMVSSGVRPDGVTFITLLSGCSHAGLADLGEELFESMSGDFGIRPSSEHYACLVDLL
GRAGKIKEALQVVEKMPVKPSGSIWGSLLNSCRLHGNVSLAELVAEQLFEMEPNNCGNYV
ILSNIYANAGMWEGVKKVREMMENKGIKKEAGCSWIQVRNRVHTFMAGGGFEFRNSDEYK
EVWDELSEAIEKMGYKPDTRVVLHDVNEETKAEWICGHSERLATVFGLIHTGSGIPIRVT
KNLRICADCHSWMKFVSEMTRRKIIVRDTNRFHHFDKGICSCNDYW

Transcript Sequence

Gene sequence data has not been registered.